PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G053800.1.p
Common NameGLYMA_11G053800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 497aa    MW: 54211.6 Da    PI: 8.0285
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G053800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.86.2e-14236286155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV+ +k  grW+A+   +     +k+++lg f+t+ eAa+a+++a+ k +g
  Glyma.11G053800.1.p 236 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIEAARAYDKAAIKCNG 286
                          89********.7******5553..2.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103210.784144201IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-7153202IPR016177DNA-binding domain
SMARTSM003802.3E-11154207IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-8171201IPR001471AP2/ERF domain
SuperFamilySSF541715.69E-17236296IPR016177DNA-binding domain
PfamPF008471.3E-9236286IPR001471AP2/ERF domain
CDDcd000182.12E-25236296No hitNo description
SMARTSM003801.4E-31237300IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-16237294IPR001471AP2/ERF domain
PROSITE profilePS5103215.461237294IPR001471AP2/ERF domain
PRINTSPR003674.6E-6238249IPR001471AP2/ERF domain
PRINTSPR003674.6E-6276296IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MWNLNDSPDQ RKDYESEGCS SSLNDDKGKR VGSASNSSSS AVVVEDGSEE EDSERGGSRT  60
LDKKTNKIFG FAVAHDDSDH PPVTHQFFPV EDSELPVSAA AAGSGGGGGG SSFPRAHWVG  120
VKFCQSETPG AGKAVTVSEP MKKSRRGPRS RSSQYRGVTF YRRLVDGNLI YGGFDTAHAA  180
ARAYDRAAIK FRGVEADINF NIEDYEEDLK QMTNLTKEEF VHVLRRQSTG FPRGSSKYRG  240
VTLHKCGRWE ARMGQFLGKK YVYLGLFDTE IEAARAYDKA AIKCNGKEAV TNFDPSIYDS  300
ELNSESSGGV AADHNLDLSL GNSSSKHNNS QTSGNHFANS ATDQHMPPES NWRNGGSKPK  360
VHLVNILPKP CGRSNIEAYG HGESETLRLL SQTHLQSPTN KEMHRYGPYR SPAEPQKPHN  420
FAHHLHQPSF HVPSSSSNGG RIGSDLSLSM SDQQQWQAGP PHLLATAAAS SGFPQQIRPS  480
QGWLQKNGFH SLMRPS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.227460.0cotyledon| flower| hypocotyl| leaf| root| seed coat| somatic embryo| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1708600.0AC170860.16 Glycine max cultivar Williams 82 clone gmw1-57d24, complete sequence.
GenBankKF2208340.0KF220834.1 Glycine max cultivar Williams 82K clone 2f5r integrase-type DNA-binding superfamily protein (Glyma01g39520) gene, partial cds.
GenBankKF2208350.0KF220835.1 Glycine max cultivar Sowon clone 2f5r integrase-type DNA-binding superfamily protein (Glyma01g39520) gene, partial cds.
GenBankKF2208360.0KF220836.1 Glycine max cultivar Pureun clone 2f5r integrase-type DNA-binding superfamily protein (Glyma01g39520) gene, partial cds.
GenBankKF2208370.0KF220837.1 Glycine max cultivar Kwangkyo clone 2f5r integrase-type DNA-binding superfamily protein (Glyma01g39520) gene, partial cds.
GenBankKF2208380.0KF220838.1 Glycine max cultivar Ilpumgeomjeong clone 2f5r integrase-type DNA-binding superfamily protein (Glyma01g39520) gene, partial cds.
GenBankKF2208390.0KF220839.1 Glycine max cultivar Seoritae clone 2f5r integrase-type DNA-binding superfamily protein (Glyma01g39520) gene, partial cds.
GenBankKF2208400.0KF220840.1 Glycine max cultivar PI96983 clone 2f5r integrase-type DNA-binding superfamily protein (Glyma01g39520) gene, partial cds.
GenBankKF2208410.0KF220841.1 Glycine max cultivar Haman clone 2f5r integrase-type DNA-binding superfamily protein (Glyma01g39520) gene, partial cds.
GenBankKF2208430.0KF220843.1 Glycine max cultivar Hwangkeum clone 2f5r integrase-type DNA-binding superfamily protein (Glyma01g39520) gene, partial cds.
GenBankKF2208440.0KF220844.1 Glycine soja cultivar IT162825 clone 2f5r integrase-type DNA-binding superfamily protein (Glyma01g39520) gene, partial cds.
GenBankKF2208450.0KF220845.1 Glycine soja cultivar IT178480 clone 2f5r integrase-type DNA-binding superfamily protein (Glyma01g39520) gene, partial cds.
GenBankKF2208460.0KF220846.1 Glycine soja cultivar IT182869 clone 2f5r integrase-type DNA-binding superfamily protein (Glyma01g39520) gene, partial cds.
GenBankKF2208480.0KF220848.1 Glycine soja cultivar IT182848 clone 2f5r integrase-type DNA-binding superfamily protein (Glyma01g39520) gene, partial cds.
GenBankKF2208490.0KF220849.1 Glycine soja cultivar IT182932 clone 2f5r integrase-type DNA-binding superfamily protein (Glyma01g39520) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014619325.10.0PREDICTED: LOW QUALITY PROTEIN: floral homeotic protein APETALA 2-like
SwissprotP479271e-122AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLA0A0R0HKT10.0A0A0R0HKT1_SOYBN; Uncharacterized protein
STRINGGLYMA11G05720.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37843463
Representative plantOGRP4971784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-108AP2 family protein